links for 2009-06-23

• The tspair package for finding top scoring pair classifiers in R
  (tags: x46qk)
• BioTapestry
  (tags: bioinformatics gene networks programming software visualization x46qk)
• Google Visualization API – Google Code
  (tags: google visualization api programming data tools statistics web graph charts javascript x46qk)
• Innate Immunity Data Repository – Home
  (tags: bioinformatics biology systemsbiology immunology x46qk)
• Citrix XenApp – Wikipedia, the free encyclopedia
  (tags: x46qk server software linux network ica citrix)
• Integrative Oncogenomics Cancer Browser – IntOGen
  (tags: x46qk)
• R: Partitioning Around Medoids
  [[* Partitioning (clustering) of the data into k clusters ``around medoids'', a more robust version of K-means. *]]
  (tags: x46qk)
• CRAN – Package hopach
  (tags: x46qk)
• Bowtie: An ultrafast, memory-efficient short read aligner
  [[* Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small *]]
  (tags: bioinformatics software alignment dna tools genomics sequencing genetics sequence x46qk)
• A-to-I RNA editing website homepage
  (tags: x46qk)
• GMAP
  (tags: x46qk bioinformatics mapping)
• Synamatix Sdn Bhd | Powering Intelligent Platforms for Discovery
  [[* SXOligoSearch *]]
  (tags: x46qk)
• SeqMap : mapping massive amount of oligonucleotides to the genome — Jiang and Wong, 10.1093/bioinformatics/btn429 — Bioinformatics
  [[* pigeonhole like alignment *]]
  (tags: x46qk)
• The Cancer Genome Atlas Data Portal
  (tags: x46qk)
• Disease Ontology
  (tags: ontology bioinformatics disease healthcare medicine medical programming pubmed ontologies x46qk)
• R: Volcano Plot
  (tags: x46qk)
• Cell Signaling Technology
  (tags: x46qk science biology pathway pathways research companies imported protein signaling cell antibodies)
• The Cancer Genome Atlas – Ethics, Law, and Policy Group (ELP)
  (tags: x46qk)
• CTEP Common Data Elements – CORE – caDSR – National Cancer Institute – Confluence Wiki
  (tags: x46qk)
• Cancer Genome Workbench
  (tags: bioinformatics cabig genomics visualization x46qk)
• NCICB: Cancer Data Standards Registry and Repository (caDSR)
  (tags: data nih ontology standards cabig cadsr cancer x46qk)
• Sanger Institute GENCODE / ENCODE – Encyclopaedia of DNA Elements
  [[* RGASP *]]
  (tags: BioinfoConf)
• Hierarchical Data Format – Wikipedia, the free encyclopedia
  [[* HDF5 (discussed at JC) *]]
  (tags: clip clipwikipedia database free science storage wikipedia)
• Gamers Unravel the Secret Life of Protein
  [[* Baker lab *]]
  (tags: clip clippoppress pubwired science biology protein proteins bioinformatics genetics innovation life gaming)
• Amazon.com: Panasonic Lumix DMC-FX580 12MP Digital Camera with 5x MEGA Optical Image Stabilized Zoom and 3 inch LCD (Black): Camera & Photo
  (tags: UsefulCameraComparison cameras HighEndJun09)
• Amazon.com: Canon Powershot SD990IS 14.7MP Digital Camera with 3.7x Optical Image Stabilized Zoom (Black): Camera & Photo
  (tags: cameras UsefulCameraComparison HighEndJun09)